Here's a sketch of an example. Some details need to be filled in. Let $k_i$ be a rapidly increasing sequence of positive integers (i.e., super-exponential). We will define a function with translation numbers $\tau(\frac{1}{n})\sim 2^{n-1} \Pi_{i=1}^{n} k_i$ for $n\geq 1$. Let $\tau_n=2^{n-1} \Pi_{i=1}^{n} k_i$. The function will be defined inductively. Start with the tent map written as $\phi_1(x)=2 \min{\{|x|,|1-x|\}}$ on $[0,1]$ (i.e., $k_1=1$). Suppose $\phi_{n-1}$ is defined on $[0,\tau_{n-1})$ for $n>1$. Let $c_n=\max{\{\phi_{n-1}(x): x\in [0,\tau_{n-1})\}}$. Define $\phi_{n}$ in the following way:
$$\phi_n(x)=\phi_{n-1}(x)\ \ \mbox{for}\ x\in [0,\tau_{n-1}),$$
$$\phi_n(x) = \Big( \frac{c_n n^2+1}{c_nn^2}\Big) \phi_{n-1}(x-\tau_{n-1}),\ \ x\in [i\tau_{n-1},(i+1)\tau_{n-1}), i\in \{1,2,\ldots,k_n-1\},$$
$$\phi_n(x) = \Big( \frac{c_n n^2}{c_n n^2+1}\Big) \phi_{n-1}(x-\tau_{n-1}),\ \ x\in [i\tau_{n-1},(i+1)\tau_{n-1}), i\in \{k_n+1, k_n+2, \ldots ,2k_n-1\}.$$
Define $\phi_n(2k_n \tau_{n-1})=0$.
Define the function $\phi(x)=\lim_{n\to \infty} \phi_n(x)$ and let $\phi(-x)=-\phi(x)$ for $x>0$. This function is determined by the parameter sequence $(k_n)$ and $\phi_1$. Also, $\phi_1$ could be a different function such as $\phi_1(x)=\sin{(2\pi x)}$. It's clear that $\phi$ is continuous and also straightforward to show that $\phi$ is almost periodic according to Bohr's "unhappy criterion".
Given a sequence $k_n$ and $\phi_1$, define the mapping $\Phi((k_n),\phi_1)=\phi$ as above.
To construct two almost periodic functions $\phi$ and $\psi$, let $k_n$ be a sequence with super-exponential growth and define $m_n$ satisfying:
$$\Big(\frac{\sqrt{k_{n+1}}\Pi_{i=1}^{n} k_i}{\Pi_{i=1}^{n} m_i}\Big)\leq m_{n+1}<\Big(\frac{\sqrt{k_{n+1}}\Pi_{i=1}^{n} k_i}{\Pi_{i=1}^{n} m_i}\Big)+1.$$
Thus, $2^{n} \sqrt{k_{n+1}}\Pi_{i=1}^{n}k_i \leq 2^{n}\Pi_{i=1}^{n+1} m_i = 2^{n} \Big( \sqrt{k_{n+1}}\Pi_{i=1}^{n}k_i + \Pi_{i=1}^{n} m_i\Big)$.
Let $\phi=\Phi((k_n),\phi_1)$ and $\psi=\Phi((m_n),\phi_1)$. The translation numbers for $\phi$ and $\psi$ will be sufficiently far apart and incompatible such that $\phi + \psi$ will not be almost periodic using Bohr's unhappy criterion.
Remark: I'm not sure there will be free time to work on this in the near future. This construction should work, but requires more elbow grease, especially to show that $\phi + \psi$ is not almost periodic.